The Reason of Church-Government Urged against Prelaty (1642)
Apology for Smectymnuus (1642)
Doctrine and Discipline of Divorce (1643)
Judgment of Martin Bucer Concerning Divorce (1644)
Of Education (1644)
Areopagitica (1644)
Tetrachordon (1645)
Colasterion (1645)
The Tenure of Kings and Magistrates (1649)
Eikonoklastes (1649)
Defensio pro Populo Anglicano [First Defence] (1651)
Defensio Secunda [Second Defence] (1654)
A Treatise of Civil Power (1659)
The Likeliest Means to Remove Hirelings from the Church (1659)
The Ready and Easy Way to Establish a Free Commonwealth (1660)
Brief Notes Upon a Late Sermon (1660)
Accedence Commenced Grammar (1669)
History of Britain (1670)
Artis logicae plenior institutio [Art of Logic] (1672)
Of True Religion (1673)
Epistolae Familiarities (1674)
Prolusiones (1674)
A brief History of Moscovia, and other less known Countries lying Eastward of Russia as far as Cathay, gathered from the writings of several Eye-witnesses (1682)